merge_fastq

Package to merge multiple pair of pair-end fastq data

• Free software: Apache Software License 2.0

• Documentation: https://merge-fastq.readthedocs.io.

Features

• Given multiple pair-end fastq data merge them into single pair-end fastq w.r.t each READ1 and READ2

Usage

> merge_fastq –help

Usage: merge_fastq [OPTIONS]

Console script for merge_fastq.

Options:

-fp1, --fastq1 PATH

Full path to gziped READ1 fastq files, can be specified multiple times for example: –fastq1 test_part1_R1.fastq.gz –fastq1 test_part2_R1.fastq.gz [required]

-fp2, --fastq2 PATH

Full path to gziped READ2 fastq files, can be specified multiple times for example: –fastq2 test_part1_R2.fastq.gz –fastq2 test_part2_R2.fastq.gz [required]

-op, --output-path PATH

Full path to write the output files (default: Current working directory)

-of1, --out-fastq1 TEXT

Name of the merged output READ1 fastq file (default: merged_fastq_R1.fastq.gz)

-of2, --out-fastq2 TEXT

Name of the merged output READ2 fastq file (default: merged_fastq_R2.fastq.gz)

--help

Show this message and exit.

Credits

This package was created with Cookiecutter and the audreyr/cookiecutter-pypackage project template.